FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925671

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925671
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491695
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15600.3172698522458028No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT8150.16575315998739057No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7750.1576180355708315No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7090.14419508028350908No Hit
ATCAGAGTGTTTCGGCAGGATCAGGGTGTTCGGGTTGGACTGGA6500.1321957717690845No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA5970.12141673191714375No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT5680.11551876671513844No Hit
ACGAGAGCTGGAACGAGAGCTGGCCTGGGAACCGCCACGAGAAC5200.1057566174152676No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)