FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925679

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925679
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457535
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12180.266209142469975No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10310.2253379522878031No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10140.22162238954396932No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10000.21856251434316498No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9060.19801763799490749No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8610.18818232484946507No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8150.17812844918967946No Hit
GGAGCGGCCGAATGCCAGACCCGGGTAATCCGCGCAACGACCTT7890.1724458238167572No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7660.1674188859868644No Hit
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTACCCG6130.13397882129236013No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6120.13376025877801698No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6030.13179319614892848No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5830.12742194586206518No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4970.108625569628553No Hit
GGACGCTGCAGACGCTTCGGAGCCTTTTTTCGGAGACAGCGGAA4650.10163156916957172No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)