FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925680

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925680
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457535
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA25360.5542745363742665No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23310.5094692209339176No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13210.28872108144732095No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10750.23495470291890236No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10500.22949064006032327No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10180.22249663960134197No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8600.18796376233512188No Hit
ATCGACGAAGGCATTGCACTGGCTGACGATG7630.1667631984438349No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7390.16151769809959893No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC6890.1505895723824407No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6330.13835007157922344No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5590.12217644551782923No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5510.12042794540308391No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5000.10928125717158249No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4710.10294294425563072No Hit
GATGACGTAGCACCGGGTCCGGCGATTAAAG4700.10272438174128756No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)