FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925682

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925682
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432093
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33600.7776103755441537No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23160.5359957231429344No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22990.5320613849333361No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11490.265914976636974No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10590.24508612729204127No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10150.2349031342789631No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9530.22055437139689837No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7490.1733423128817176No Hit
ATCGACGAAGGCATTGCACTGGCTGACGATG6380.14765339868963395No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC6070.14047901724860157No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5580.12913886593858268No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5560.12867600261980638No Hit
GATGACGTAGCACCGGGTCCGGCGATTAAAG5150.1191873045848926No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4760.11016146986875511No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4610.106689994977933No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)