FastQCFastQC Report
Sun 21 May 2023
EGAF00007925683

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925683
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435265
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12230.2809782546264919No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10060.23112356840085924No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9960.2288261174227195No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9210.21159523508667133No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9010.20700033313039182No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8220.18885047040308778No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8070.18540429393587815No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7540.17322780375173744No Hit
GGAGCGGCCGAATGCCAGACCCGGGTAATCCGCGCAACGACCTT6720.15438870573099148No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5770.1325629214386638No Hit
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTACCCG5570.1279680194823843No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5310.12199464693922094No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5300.12176490184140697No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5250.1206161763523371No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4620.10614223519005664No Hit
GGACGCTGCAGACGCTTCGGAGCCTTTTTTCGGAGACAGCGGAA4600.10568274499442869No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)