FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925684

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925684
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435265
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35350.812148920772403No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24910.5722950386546127No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23870.5484015484819592No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12040.2766130977680264No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10640.24444878407406984No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10370.23824566643309247No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9160.21044650959760147No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8010.18402582334899428No Hit
ATCGACGAAGGCATTGCACTGGCTGACGATG6450.14818558809001411No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC6280.14427992142717655No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5930.1362388430036874No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5500.12635980379768647No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5190.11923770576545323No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4930.11326433322228988No Hit
GATGACGTAGCACCGGGTCCGGCGATTAAAG4680.10752070577694048No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4610.10591249009224266No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)