FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925685

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925685
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences406295
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG17030.4191535706814014No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT12960.3189800514404558No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG12110.298059291893821No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11580.28501458300003696No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11420.2810765576736115No Hit
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTACCCG10080.248095595564799No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9680.23825053224873555No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9480.2333280005907038No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7960.19591675998966268No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6730.16564319029276756No Hit
TGCAGCTGCACGCTGAGCCGCGGTACCCGGACGGCGACGGTGAC6280.1545674940621962No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5880.14472243074613275No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5850.14398405099742798No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5800.14275341808292005No Hit
CAGGGACGGACCACCGGCAGCGATCATAGAGCTGAACGGGCGCT4990.12281716486789156No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT4590.1129721015518281No Hit
ACGGCGGGCAACACGACGACGACGACGTTTCATTTTTGCGTAGC4580.11272597496892652No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA4560.11223372180312334No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG4560.11223372180312334No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)