FastQCFastQC Report
Sun 21 May 2023
EGAF00007925686

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925686
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences406295
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33550.8257546856348219No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21460.5281876469068042No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG16970.4176768111839919No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT13870.3413775704845002No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12460.30667372229537654No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12460.30667372229537654No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG12250.3015050640544432No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11120.27369276018656397No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC11120.27369276018656397No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11110.27344663360366234No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8040.19788577265287538No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7070.1740114941114215No Hit
CGCAACTACACTCCGACCCCGCCACCGGTGT6950.17105797511660245No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6820.16785832953888186No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4990.12281716486789156No Hit
GGTGCGCACAAACGTGGCCGCACCGGCCGCA4880.12010977245597411No Hit
TCCACCATGTCCCTGGGCCGTGGTTACGGCT4790.11789463320985984No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC4700.11567949396374555No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4680.11518724079794239No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)