FastQCFastQC Report
Wed 31 May 2023
EGAF00007925687

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925687
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437064
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG17830.40794940786704004No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT14770.3379367781377556No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG12340.2823385133527355No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG12190.2789065216993392No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11760.26906814562626985No Hit
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTACCCG11600.2654073545293138No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10370.23726502297146415No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10150.23223143521314957No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8780.20088591144546336No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7430.16999798656489667No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6650.15215162996723594No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6620.15146523163655665No Hit
TGCAGCTGCACGCTGAGCCGCGGTACCCGGACGGCGACGGTGAC6550.1498636355316384No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6280.14368605055552505No Hit
CAGGGACGGACCACCGGCAGCGATCATAGAGCTGAACGGGCGCT5870.13430527336957518No Hit
ACGGCGGGCAACACGACGACGACGACGTTTCATTTTTGCGTAGC4990.11417092233631687No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG4890.11188292790071934No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT4700.10753573847308404No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA4690.10730693902952428No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)