FastQCFastQC Report
Wed 31 May 2023
EGAF00007925688

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925688
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437064
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23310.5333315029377849No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG18150.4152709900609522No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT16010.36630790913916494No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13530.30956564713634616No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC13230.3027016638295536No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12790.29263448831292443No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG12370.28302491168341476No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12340.2823385133527355No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11970.27387293394102463No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8610.19699632090494756No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7990.18281075540424285No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7760.17754836820236852No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7550.1727435798876137No Hit
CGCAACTACACTCCGACCCCGCCACCGGTGT7460.17068438489557594No Hit
TCCACCATGTCCCTGGGCCGTGGTTACGGCT5720.13087328171617887No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5580.12767008950634234No Hit
GGTGCGCACAAACGTGGCCGCACCGGCCGCA5240.11989090842531071No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5170.11828931232039244No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC4850.11096773012648034No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA4540.10387494737612799No Hit

[OK]Adapter Content

Adapter graph