FastQCFastQC Report
Wed 31 May 2023
EGAF00007925689

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925689
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences406619
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG17730.43603471554452694No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT14050.34553230419631153No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG12150.2988055157284829No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11770.2894601580349172No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11310.2781473566163903No Hit
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTACCCG10090.2481438398107319No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9380.2306827767517012No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9090.22355079324871685No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7590.18666122340569427No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6880.16920016034666358No Hit
TGCAGCTGCACGCTGAGCCGCGGTACCCGGACGGCGACGGTGAC6200.15247688868449336No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6010.14780420983771048No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5970.1468204879752299No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5870.14436118331902836No Hit
CAGGGACGGACCACCGGCAGCGATCATAGAGCTGAACGGGCGCT5070.12468674606941633No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG4770.11730883210081182No Hit
ACGGCGGGCAACACGACGACGACGACGTTTCATTTTTGCGTAGC4670.1148495274446103No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4290.1055041697510446No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT4120.10132335183550202No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA4100.10083149090426174No Hit

[OK]Adapter Content

Adapter graph