FastQCFastQC Report
Sun 21 May 2023
EGAF00007925690

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925690
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences406619
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35260.8671508217766509No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20860.513010951283634No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG17550.43160796716336425No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT15260.37528989053634976No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12250.30126482038468444No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12140.29855958526286275No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG12100.29757586340038217No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC11220.2759339824258089No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10970.26978572078530516No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10400.2557676842449566No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7950.19551472016801968No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7170.17633214384964796No Hit
CGCAACTACACTCCGACCCCGCCACCGGTGT6940.1706757431403845No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6790.16698678615608223No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5200.1278838421224783No Hit
GGTGCGCACAAACGTGGCCGCACCGGCCGCA5110.12567046793189693No Hit
TCCACCATGTCCCTGGGCCGTGGTTACGGCT5070.12468674606941633No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4580.11263615325402897No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4390.10796347440724609No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA4350.1069797525447655No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC4150.10206114323236248No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)