FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925692

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925692
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462716
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21590.46659289931621123No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20800.4495197918377579No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15640.338004305016468No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA15290.3304402700576596No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11980.2589061108757856No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10700.2312433544550005No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10550.2280016251869397No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10440.2256243570570285No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8950.19342317966095834No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7980.17245999706083212No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7640.16511207738656108No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7510.16230257868757508No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6870.14847120047718254No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6020.13010140129150494No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6010.12988528600696755No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5970.12902082486881802No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5800.1253468650316825No Hit
GCAGCTCGTGAAGAAGAAGAACCGCACGAAC5780.12491463446260773No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5400.11670225365018716No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5200.11237994795943948No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5080.10978656454499088No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4880.1054642588542432No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4710.10179029901710769No Hit

[OK]Adapter Content

Adapter graph