FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925693

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925693
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439101
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14470.3295369402483711No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT13800.31427849173652533No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13400.30516897023691586No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10900.24823446086435697No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9160.20860804234105593No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9060.20633066196615357No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8710.19835983065399532No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8140.18537876251705188No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8110.1846955484045812No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7530.1714867422301475No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6360.1448413918437899No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6120.13937567894402428No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5910.1345931801567293No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5480.12480044454464918No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5260.11979020771986398No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5250.11956246968237376No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5080.11569092304503975No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4760.10840330584535221No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4440.10111568864566466No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)