FastQCFastQC Report
Wed 31 May 2023
EGAF00007925696

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925696
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464601
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21610.46513029459686916No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20820.4481264568952714No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17160.3693491834929326No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA15470.3329738851186287No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12210.2628061497930482No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11470.24687850435104527No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10850.23353372033206987No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10630.22879847438985282No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9450.2034003370634157No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8050.17326695379476154No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8010.1724059999870857No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7220.15540216228548798No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7050.1517431086028657No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5960.1282821173436992No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5860.12612973282450962No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5780.12440782520915797No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5670.12204020223804941No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5550.1194573408150219No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5380.11579828713239963No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5380.11579828713239963No Hit
GCAGCTCGTGAAGAAGAAGAACCGCACGAAC5350.11515257177664275No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5310.11429161796896693No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5090.10955637202674984No Hit

[OK]Adapter Content

Adapter graph