FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925697

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925697
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433359
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15860.36597832282241743No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15700.3622862338153817No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG11460.2644458751289347No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10670.24621618565669573No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9910.22867876287327596No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9500.21921778479274687No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG8490.1959114729358338No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8380.19337316174349672No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8260.19060409498821992No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8010.18483520591472657No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6670.15391396048080228No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6310.14560676021497188No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC6000.13845333776384014No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCATCGC5890.13591502657150306No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5710.13176142643858785No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5510.1271463151797932No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5320.12276195948393825No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4490.10360924775994038No Hit
TTCCTGACCTTCCTCACCTTCGTCGCCATCGCCACCTTCATCAC4490.10360924775994038No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)