FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007925698

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925698
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433359
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36140.8339506044641971No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21550.49727823813512584No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16490.3805159232876206No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG11630.26836871969891013No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11100.25613867486310427No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10780.24875449684903278No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10460.2413703188349613No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10070.2323708518803117No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9520.21967929591862637No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8630.19914205081699005No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8250.1903733394252802No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8180.18875805048470207No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7110.16406720525015056No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6820.1573752939248983No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6780.15645227167313938No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6250.1442222268373335No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT6110.14099164895617722No Hit
GCCGAGGGTCTGAAGGACGCGATTAAAGACC6110.14099164895617722No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5910.13637653769738256No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5710.13176142643858785No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4870.11237795915165025No Hit
GCACCGACCTGCAACATCCGTGTGACCGTTT4700.10845511458167478No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4670.10776284789285559No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC4610.10637831451521718No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4580.10568604782639798No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4550.10499378113757876No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)