FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925699

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925699
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461890
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT18270.3955487237220983No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17060.3693520102188833No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG11920.25807010327134167No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11400.24681201151789386No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11040.23901794799627618No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11020.2385849444672974No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9800.21217172919959296No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG9270.2006971356816558No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8860.1918205633375912No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8850.1916040615731018No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7910.17125289571110006No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6410.13877763103769294No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCATCGC6380.1381281257442248No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6370.13791162397973544No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC6330.1370456169217779No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5530.11972547576262747No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5380.11647794929528676No Hit
TTCCTGACCTTCCTCACCTTCGTCGCCATCGCCACCTTCATCAC5370.11626144753079737No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4980.10781787871571152No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)