FastQCFastQC Report
Sun 21 May 2023
EGAF00007925700

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925700
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461890
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22800.49362402303578773No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19250.41676589664205765No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13180.28534932559700366No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12260.2654311632639806No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11630.2517915521011496No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11240.24334798328606377No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11140.24118296564116995No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11130.2409664638766806No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9780.21173872567061422No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9570.20719218861633723No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9320.2017796445041027No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8420.18229448570005846No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8130.1760159345298664No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7300.15804628807724783No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6830.14787070514624695No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6730.14570568750135315No Hit
GCCGAGGGTCTGAAGGACGCGATTAAAGACC6680.14462317867890623No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT6650.1439736733854381No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6470.14007664162462924No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6260.13553010457035225No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5780.12513801987486198No Hit
GCACCGACCTGCAACATCCGTGTGACCGTTT5670.1227565004654788No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5060.10954989283162657No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC4840.1047868540128602No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4760.10305483989694515No Hit
GCTATTAAAGATCTGGTGATGACGAAACCGG4720.10218883283898764No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC4680.10132282578103012No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4630.10024031695858321No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)