FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007925704

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925704
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476497
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT86671.818899174601309No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA64421.3519497499459596No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA35450.743971105799197No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA33930.7120716394856631No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC19990.41951995500496325No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC18910.3968545447295576No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG18010.3779667028333861No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG17050.35781967147746996No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG16560.3475362908895544No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC15250.32004398768512704No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA14880.31227898601670107No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG14310.30031668614912577No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG14280.2996870914192534No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG13780.2891938459213804No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT13470.2826880337126991No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACC12490.262121272536868No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT12100.2539365410485271No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT11640.2442827551904839No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC11420.23966572717141976No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG11280.2367276184320153No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA11260.2363078886121004No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11200.2350486991523556No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10860.22791329221380197No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10650.2235061291046953No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10400.21825950635575878No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG10000.2098649099574604No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9910.20797612576784322No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC9080.19055733824137402No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA8870.18615017513226736No Hit
GGTCTGCAATCTTCCTCTTACCCAGGTTATG8740.1834219313028204No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA8650.18153314711320323No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8430.1769161190941391No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8410.17649638927422417No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8410.17649638927422417No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC8350.1752371998144794No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7990.16768206305601085No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT7890.16558341395643625No Hit
GGTCTGCAGAGCTCTTCTTACCCGGGTTATG7840.16453408940664893No Hit
GGCCTGCAGTCTTCTTCTTATCCGGGTTACG7500.1573986824680953No Hit
GTACACGGCCACACCCAGGGCCCGTGGGACC7310.15341124917890353No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC7060.14816462642996703No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA7050.14795476152000955No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6920.14522651769056258No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6920.14522651769056258No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC6830.14333773350094545No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6300.13221489327320005No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6240.13095570381345528No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG6200.13011624417362544No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6190.129906379263668No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6180.12969651435371052No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6150.12906691962383815No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5990.12570908106451878No Hit
GCCGGTGATTCCCCAACTCCGGGCCCGTCCA5930.124449891604774No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA5890.12361043196494417No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC5830.1223512425051994No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5650.11857367412596513No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5430.11395664610690098No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5310.11143826718741147No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC5250.11017907772766669No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG4910.10304367078911306No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4770.10010556204970861No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)