FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925705

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925705
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451293
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA33730.7474080032262854No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA30170.6685235534342433No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT28180.6244280323426243No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC26640.5903038602415726No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC24290.5382312599574999No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT17340.38422931443651903No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG16030.3552016095973126No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG15620.3461166027392404No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC14990.3321567141524464No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG14140.3133219438369308No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT13040.2889475351933223No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG12840.284515824530848No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT12810.28385106793147685No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG12480.27653874533839434No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG12310.2727717912752912No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC11610.2572608039566313No Hit
AACCAGCGGTACCAGGGACAGCTGCAGGCGTGGCGGACCGGTTT11260.2495053102973013No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT10770.23864761917423935No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT10530.23332956637927021No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9620.21316528286501232No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG9490.21028467093440403No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG9220.20430186154006377No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG9140.20252917727507408No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG9060.20075649301008436No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9030.2000917364107132No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC8910.19743271001322868No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8860.1963247823476101No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC8850.19610319681448635No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT8830.19566002574823893No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA8610.19078514401951727No Hit
CCACTGCGGCGGCAGATGCGGAGCACGCGGGTCCCAAGGGCCCT8280.1834728214264347No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8170.18103538056207386No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8100.17948428183020787No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG8000.17726842649897073No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT7890.1748309856346099No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG7790.17261513030337275No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT7540.1670754919752799No Hit
CCACTGAGGCGGCAGGTGCGGCGCGCGCGGGTCCCACGGGCCCT7360.16308695237905307No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA7210.15976316938219737No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7040.15599621531909424No Hit
CCATTGCGGCGGCAGGTGCGGAGCACGCGGATCCCACGGGCCCT7040.15599621531909424No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6970.15444511658722826No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6920.15333718892160966No Hit
CACCAGCGGAACCAGGGACAGCTGCAGACGCGGAGGACCGGTTT6620.14668962292789828No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT6290.13937730033481574No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG5970.1322865632748569No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5910.13095705007611463No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG5840.12940595134424865No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG5770.12785485261238264No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG5680.12586058281426923No Hit
CTTGCGAGACGCTGCGCTAGTAGGGGCAACCGCCGGGTCCGGTT5640.12497424068177436No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5510.12209362875116608No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5500.12187204321804238No Hit
CGCCAAATTTAAATGGCCGCCTCATTTACGGCTGGCAGCGGAGG5360.11876984575431039No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5210.1154460627574547No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT5090.11278703635997013No Hit
TGGGTCCGGCTTGCGGGTAGCTGCGCTAGTCGGGGCGACAGCCG5050.11190069422747527No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG4990.11057118102873299No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4890.10835532569749586No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT4670.10348044396877416No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG4560.10104300310441333No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA4540.10059983203816589No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)