FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925708

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925708
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447279
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37220.8321428012493322No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27390.6123694606721979No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC18750.419201438028613No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14630.3270889087124591No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG13590.3038372022831387No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12810.2863984224611484No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11050.24704938081152927No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9850.22022048877769806No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG8100.18109502122836083No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACC7270.1625383709049609No Hit
CCGTTCGCCTCTGATTACTCCCAGGGTGCGT6640.1484532025871995No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6380.1426402759798694No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5970.13347373786831038No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5550.12408362565646945No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5380.12028286595167668No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5210.11648210624688393No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5150.11514066164519238No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC4590.10262051202940446No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)