FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925709

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925709
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472644
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA21300.45065630791885647No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14030.29684075117847686No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT13660.2890124491160366No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12670.2680664517057235No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT11800.24965936307241812No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10130.21432621592572842No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC8500.17983937170470798No Hit
AACCAGCGGTACCAGGGACAGCTGCAGGCGTGGCGGACCGGTTT7390.1563544655173873No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7360.15571973832313538No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6740.14260204297526258No Hit
GGAGATTTCGCTGTTGTCGGACAGGATTTCCTGAGCTTCTGCGG6510.1377358011526646No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6260.132446407867232No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6250.1322348321358147No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT6130.12969592335880703No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5320.11255828911400548No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5030.10642259290290366No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT4950.10472998705156525No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA4900.10367210839447871No Hit
CACCAGCGGAACCAGGGACAGCTGCAGACGCGGAGGACCGGTTT4750.10049847242321916No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)