FastQCFastQC Report
Wed 31 May 2023
EGAF00007925711

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925711
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448743
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA19200.4278618273711233No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13350.2974976768439842No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT13240.29504638512467046No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12230.2725390702473353No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10180.22685590638739767No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9650.21504513719434065No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC7860.1751559355800536No Hit
GGAGATTTCGCTGTTGTCGGACAGGATTTCCTGAGCTTCTGCGG6920.15420853361500902No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6900.15376284421149744No Hit
AACCAGCGGTACCAGGGACAGCTGCAGGCGTGGCGGACCGGTTT6690.14908310547462578No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6250.13927793859737087No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6120.13638095747454557No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6110.13615811277278977No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT5400.12033613894812845No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5170.11521071080774518No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4670.10406847571995553No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT4610.10273140750942077No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)