FastQCFastQC Report
Wed 31 May 2023
EGAF00007925712

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925712
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448743
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38080.8485926242860613No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28100.6261936119337795No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC18510.41248554294997364No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14100.3142110294756687No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG13400.29861190035276314No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12790.28501837354565973No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10390.23153564512426936No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10220.2277472851944209No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG8430.18785808358013384No Hit
CCGTTCGCCTCTGATTACTCCCAGGGTGCGT7060.15732835943959014No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACC6890.15353999950974165No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6610.14730034786057944No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6410.14284345382546357No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5930.1321469081411855No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5350.11922191543934947No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5330.11877622603583789No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5170.11521071080774518No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC4660.10384563101819974No Hit
GTACACGGCCACACCCAGGGCCCGTGGGACC4490.10005727108835123No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)