FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925714

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925714
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430110
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT55381.2875775964288205No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12620.29341331287345096No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7770.18065146125409778No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7650.17786147729650553No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5730.13322173397502965No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5070.11787682220827231No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4810.11183185696682243No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4560.10601939038850526No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG4340.10090441979958614No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)