FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925715

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925715
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468088
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11110.23734853275452478No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8880.18970791816923313No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7670.16385807796824528No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7120.15210815060415991No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6990.14933089504537608No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6300.1345900770795235No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5230.11173112748030287No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT4940.1055357112337851No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4940.1055357112337851No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)