FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925716

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925716
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468088
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA16080.34352514911726No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11350.2424757737861257No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9550.20402146604911897No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8950.19120336347011674No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8130.17368528994548033No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7490.1600126471945446No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7080.15125361043222643No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6990.14933089504537608No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6500.1388627779391909No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5720.12219924458648801No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5480.11707200355488712No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5270.11258566765223632No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)