FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007925720

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925720
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470594
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA16430.3491332231180168No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10850.2305596756439734No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9240.19634759474196442No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9170.1948601129636162No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8460.17977279778322716No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7580.16107302685542102No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7550.16043553466470037No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7250.15406061275749372No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6280.1334483652575256No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5970.12686094595341207No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5720.12154851103073987No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5150.10943615940704726No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4910.10433622188128196No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)