FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925724

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925724
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457617
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23080.5043518925214754No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG11800.25785755336886523No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9650.21087503305165672No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8390.18334109091226944No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7840.17132230664507656No Hit
GCAGACGATGACAAAGGTACCAACATGTCTG7340.16039613912944667No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7290.15930352237788367No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7220.1577738589256955No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC7180.1568997655244451No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6100.13329924369068458No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5460.11931374927067832No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5460.11931374927067832No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4970.10860610510536103No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4960.10838758175504844No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4950.10816905840473584No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4750.1037985913984839No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4590.10030221779348232No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)