FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925725

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925725
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455416
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13130.2883078328385476No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7560.16600207283011575No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6550.14382454722715057No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6230.13679800446185464No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6200.13613926607760818No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5640.12384281623834034No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5270.11571837616596693No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG4850.10649603878651606No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT4790.10517856201802309No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4630.10166529063537512No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)