FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007925728

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925728
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469222
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA15100.32180929282940696No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT12090.2576605530004987No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11650.24828332857368154No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT11620.24764397236276217No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9880.2105613121294398No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9300.198200425384999No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9050.19287245696067107No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8430.1796590952683378No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7960.1696425146306013No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA7940.16921627715665505No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7570.16133088388864972No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6910.14726504724842399No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6370.13575663545187566No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC6300.13426480429306384No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6200.13213361692333267No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5900.12574005481413916No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5850.12467446112927355No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC5600.11934649270494563No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5340.11380540554364459No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5120.10911679333023602No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5100.10869055585628977No Hit

[OK]Adapter Content

Adapter graph