FastQCFastQC Report
Wed 31 May 2023
EGAF00007925732

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925732
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456370
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39930.8749479588930034No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12400.27170935863444134No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10530.2307338343887635No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9300.20378201897583104No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC8510.18647150338541096No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7500.16434033788373467No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7110.15579464031378049No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7030.15404167670968733No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6390.14001796787694196No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5150.11284703201349781No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4840.10605429804763679No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4760.10430133444354361No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4590.10057628678484563No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)