FastQCFastQC Report
Wed 31 May 2023
EGAF00007925734

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925734
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485963
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14470.2977592944318806No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10780.22182758769700572No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10010.20598276000436247No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC9580.19713434973444482No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9260.1905494862777619No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7890.16235803960383816No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7800.16050604675664606No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7500.15433273726600585No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6680.13745902465825588No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6000.12346618981280467No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5230.10762136212016142No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5070.10432893039181997No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)