FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925736

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925736
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477042
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT52821.1072400333723236No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA41330.8663807379643722No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA21410.4488074425312656No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA19450.4077209134625463No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16400.3437852432280596No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11560.24232667144612005No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10910.22870103680598355No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10670.22367003324654852No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10490.21989678057697226No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8730.1830027544744488No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8340.17482737369036688No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7860.16476536657149685No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7730.16204023964346956No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6900.14464135233375677No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6790.14233547570234906No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6650.13940072362601197No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6470.1356274709564357No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6310.13227346858347902No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC5770.12095371057475023No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5680.1190670842399621No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG5420.11361683038390749No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC4960.10397407356165704No Hit

[OK]Adapter Content

Adapter graph