FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925738

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925738
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451323
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT45641.0112491497220395No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38870.8612457153745765No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT29960.6638261289586393No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT26840.5946960380924526No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT24850.5506034480848527No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC21150.46862225058328516No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19780.4382670504272993No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG19620.4347219175623666No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA19250.4265237978122099No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG18510.41012755831189635No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC17930.3972764516765155No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC14400.3190619578439388No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC11570.2563574202954425No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11400.25259071662645155No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT11370.2519260042142767No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC9620.2131511135040758No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT9360.20739027259856022No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG8440.18700575862519747No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG8040.17814292646286584No Hit
ATGGAACCGGTCCAGCAGCGTCCGGTTATGT7730.17127423153705884No Hit
ATGGAACCTGTGCAGCAGCGCCCGGTAATGT7050.15620741686109504No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6590.14601515987441369No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6350.14069746057701468No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5710.12651692911728407No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5690.1260737875091675No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG5570.123414937860468No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5160.11433053489407809No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5160.11433053489407809No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC4930.1092344064007374No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)