FastQCFastQC Report
Wed 31 May 2023
EGAF00007925743

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925743
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485516
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11230.2313003073019221No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6700.13799751192545665No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT6130.12625742509000734No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5650.11637103617594476No Hit
CGCCAGCAGCGCCAGCTGGCGCGGGGAGACCGCGTCGCCAGCAT4920.10133548636914128No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)