FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925752

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925752
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433853
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT58391.3458475566608967No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37640.8675749620263083No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA35940.828391183188776No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26890.6197951840830881No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18030.4155785484945362No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16780.38676694640811515No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16090.3708629420564108No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14680.33836345490292796No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14310.3298352206853473No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13950.3215374792844581No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12740.2936478484648026No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10540.2429394287927017No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10500.2420174575259362No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10500.2420174575259362No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9910.2284183813411455No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9250.21320585543951523No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8880.20467762122193459No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8710.20075924333818138No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7220.16641581365116756No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7080.1631889142174884No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7030.16203645013403156No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6580.15166427338292002No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6550.1509727949328459No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6510.15005082366608044No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6450.14866786676593224No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5740.13230287678084512No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5620.1295369629805487No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5600.12907597734716597No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5570.1283844988970919No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5440.12538809228010409No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA5430.12515759946341273No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC5350.12331365692988179No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5310.12239168566311631No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5130.1182428149626717No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4910.11317197299546161No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4500.10372176751111552No Hit
CACACCCCTCCGATGCCGTCTATCGGTCTGG4420.10187782497758457No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4380.10095585371081911No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)