FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925754

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925754
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462811
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT64851.4012199364319344No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA38550.8329534086268476No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC30360.6559913225917275No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA20020.43257398808584935No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA17880.38633481053821106No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG17760.3837419594607734No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16670.36019022884071467No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16600.358677732378876No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14560.3145992640624358No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14450.31222248390811796No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11890.256908327589448No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11550.2495619162033746No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10630.22968339127635257No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10400.22471376004459703No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10080.21779949050476327No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10050.21715127773540388No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9460.20440309327133538No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8780.18971027049918865No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7730.16702282357160916No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7220.1560032064924991No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7150.15449071003066048No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7130.15405856818442087No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7110.15362642633818124No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6850.14800858233706632No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6680.14433537664402962No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6080.13137112125684133No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5940.12834612833316408No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5920.12791398648692448No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5810.12553720633260662No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5780.1248889935632472No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA5680.12272828433204915No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5620.12143185879333032No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC5450.11775865310029365No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5430.11732651125405404No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5400.1166782984846946No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4770.10306583032814692No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4690.10133726294318847No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG4640.10025690832758945No Hit
CACACCCCTCCGATGCCGTCTATCGGTCTGG4630.10004083740446965No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)