FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007925756

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925756
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437107
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT62771.4360328249147234No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37990.8691235784373162No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA36660.8386962459992634No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28770.6581912437915659No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17970.4111121533171512No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16450.37633805910223356No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16260.37199129732536884No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14370.32875245649234625No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14280.3266934640717261No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14030.3209740406811147No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13640.31205174019176085No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11160.25531506015689526No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10690.24456254418254567No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10080.23060715110945376No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9840.22511650465446678No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9650.22076974287760207No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9380.21459276561574167No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8830.2020100341563965No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7040.1610589626796185No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6960.15922874719462285No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6950.15899997025899837No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6720.1537381007396358No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6710.1535093238040114No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6520.14916256202714667No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5990.1370373844390504No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5760.13177551491968784No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5600.12811508394969653No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5420.12399709910845629No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5330.12193810668783617No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA5280.12079422200971388No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5280.12079422200971388No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC5160.11804889878222037No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5080.1162186832972247No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5000.11438846781222906No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4930.11278702926285783No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4560.10432228264475288No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4540.10386472877350397No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC4410.10089062861038602No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)