FastQCFastQC Report
Wed 31 May 2023
EGAF00007925762

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925762
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484938
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29760.6136866980933645No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18290.37716161653654695No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14670.3025128985561041No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14350.2959141168561754No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG12920.2664258111346193No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9270.1911584573698081No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9140.18847770230421207No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9110.18785906651984377No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9110.18785906651984377No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8660.1785795297543191No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8220.16950620491691723No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8030.16558817828258457No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7910.16311363514511132No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7820.1612577277920064No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7690.1585769727264104No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7100.14641046896716692No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6710.1383682037703789No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6040.12455200458615329No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5900.1216650375924345No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5760.1187780705987157No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5540.11424140818001476No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5260.1084674741925772No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5130.10578671912698118No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5060.10434323563012178No Hit

[OK]Adapter Content

Adapter graph