FastQCFastQC Report
Wed 31 May 2023
EGAF00007925764

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925764
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460018
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39200.8521405684125403No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29130.6332360907616659No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17350.3771591546417749No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13840.30085779252116224No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13200.2869452934450391No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG12400.2695546695998852No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8790.1910794794986283No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8730.18977518271024177No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8580.18651444073927542No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8130.17673221482637635No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7690.16716737171154172No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7550.16412401253863979No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7230.15716776300057825No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7200.15651561460638497No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7130.154993935019934No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7010.1523853414431609No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6620.1439074123186484No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5620.12216913251220604No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5520.11999530453156182No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4830.10499589146511659No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4820.10477850866705216No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4800.10434374307092331No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4790.10412636027285888No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4760.10347421187866562No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)