FastQCFastQC Report
Sun 21 May 2023
EGAF00007925766

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925766
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486835
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29840.6129386753212074No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17790.3654215493955858No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14790.3037990284182526No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14010.28777717296414596No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13200.271139092300266No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9860.2025326856121684No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9850.2023272772089106No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9070.186305421754804No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8560.17582959318865735No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8530.175213367978884No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8470.17398091755933737No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8230.16905111588115068No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8120.16679162344531515No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7940.16309427218667516No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7570.15549416126613738No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7370.15138599320098184No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7220.1483048671521152No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6080.12488830918072859No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5810.11934228229276861No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5470.11235839658200417No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5430.11153676296897307No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5380.11050972095268419No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5160.10599073608101309No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5050.10373124364517752No Hit

[OK]Adapter Content

Adapter graph