FastQCFastQC Report
Wed 31 May 2023
EGAF00007925769

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925769
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510649
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11660.22833688110620015No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA8490.1662590154881337No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6630.129834778879426No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5750.11260180672046749No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG5430.1063352713899371No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5360.1049644667863836No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5140.10065622374664399No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)