FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925770

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925770
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510649
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11760.23029517339699088No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9410.18427530456340852No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9160.17937957383643166No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA8630.16900062469524077No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7440.14569694643483097No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6130.12004331742547229No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6130.12004331742547229No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6100.11945582973823506No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5940.1163225620729699No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG5720.11201431903323025No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5390.10555195447362081No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5180.10143954066296028No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)