FastQCFastQC Report
Sun 21 May 2023
EGAF00007925772

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925772
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences512674
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11030.21514646734572068No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10220.19934695342459344No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9800.19115461287289778No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA8570.16716275840007488No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7220.14083023519819612No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7040.1373192321046123No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6630.129321947280338No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6520.12717633427870342No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6290.12269005254801296No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG5800.11313232190436809No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5510.10747570580914967No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5300.10337953553330186No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)