FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925773

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925773
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486624
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10160.20878542776352993No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA8470.17405635562569868No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5850.12021601893864667No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5680.11672256197803642No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5520.11343460248569737No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5380.1105576379299007No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG5280.1085026632471888No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)