FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925774

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925774
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486624
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41710.8571299401591372No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9950.20446998092983493No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9100.18700269612678372No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA8530.17528934043532582No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6420.13192937463010454No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6250.1284359176694943No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6160.1265864404550536No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5940.12206549615308739No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5760.11836654172420596No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG5650.11610606957322285No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5000.10274873413559545No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)