FastQCFastQC Report
Sun 21 May 2023
EGAF00007925775

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925775
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449543
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12250.2724989600549892No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG11250.2502541469892758No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10440.23223584840604794No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10150.22578485261699105No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT6890.15326676202276535No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT6400.14236680362056578No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4830.10744244710739573No Hit
AAACGCGTCACCGTCGCCGTGGCCACGAATGATAGCAGAAACGT4670.10388327701688158No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)