FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925777

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925777
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420772
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11250.26736569923854253No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG10790.25643341286967763No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9810.23314288973600902No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8600.20438622341790802No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT6300.14972479157358382No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5790.1376042132081032No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4720.11217476448052628No Hit
AAACGCGTCACCGTCGCCGTGGCCACGAATGATAGCAGAAACGT4320.10266842850760032No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)